🚀 mdapy - Molecular Dynamics Analysis with Python¶
Overview¶
mdapy provides a comprehensive suite of powerful, flexible, and straightforward tools for analyzing atomic trajectories generated from Molecular Dynamics (MD) simulations.
Dependencies¶
Citation¶
If you find mdapy useful, you can star it! If you use mdapy in your scientific publications, please cite the paper:
@article{mdapy023,
title = {mdapy: A flexible and efficient analysis software for molecular dynamics simulations},
journal = {Computer Physics Communications},
pages = {108764},
year = {2023},
issn = {0010-4655},
doi = {https://doi.org/10.1016/j.cpc.2023.108764},
url = {https://www.sciencedirect.com/science/article/pii/S0010465523001091},
author = {Yong-Chao Wu and Jian-Li Shao},
keywords = {Simulation analysis, Molecular dynamics, Polycrystal, TaiChi, Parallel computing}
}
Release Notes¶
Getting Started¶
Mdapy Python API¶
- Index
- mdapy.ackland_jones_analysis module
- mdapy.angular_distribution_function module
- mdapy.atomic_strain module
- mdapy.atomic_temperature module
- mdapy.bond_analysis module
- mdapy.box module
- mdapy.build_lattice module
- mdapy.calculator module
- mdapy.centro_symmetry_parameter module
- mdapy.cluster_analysis module
- mdapy.common_neighbor_analysis module
- mdapy.common_neighbor_parameter module
- mdapy.create_polycrystal module
- mdapy.data module
- mdapy.eam module
- mdapy.elastic module
- mdapy.identify_diamond_structure module
- mdapy.identify_fcc_planar_faults module
- mdapy.knn module
- mdapy.lammps_potential module
- mdapy.lindemann_parameter module
- mdapy.load_save module
- mdapy.mean_squared_displacement module
- mdapy.minimizer module
- mdapy.neighbor module
- mdapy.nep module
- mdapy.nep4ase module
- mdapy.phonon module
- mdapy.pigz module
- mdapy.plotset module
- mdapy.polyhedral_template_matching module
- mdapy.potential_tool module
- mdapy.radial_distribution_function module
- mdapy.spatial_binning module
- mdapy.spline module
- mdapy.steinhardt_bond_orientation module
- mdapy.structure_entropy module
- mdapy.structure_factor module
- mdapy.system module
- mdapy.tool_function module
- mdapy.trajectory module
- mdapy.visualize module
- mdapy.void_analysis module
- mdapy.voronoi module
- mdapy.warren_cowley_parameter module
- mdapy.wigner_seitz_defect module