mdapy package
=============

Submodules
----------

mdapy.ackland\_jones\_analysis module
-------------------------------------

.. automodule:: mdapy.ackland_jones_analysis
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mdapy.atomic\_strain module
---------------------------

.. automodule:: mdapy.atomic_strain
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mdapy.bond\_analysis module
---------------------------

.. automodule:: mdapy.bond_analysis
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mdapy.box module
----------------

.. automodule:: mdapy.box
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mdapy.cell\_opt module
----------------------

.. automodule:: mdapy.cell_opt
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mdapy.centro\_symmetry\_parameter module
----------------------------------------

.. automodule:: mdapy.centro_symmetry_parameter
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mdapy.cluser\_analysis module
-----------------------------

.. automodule:: mdapy.cluser_analysis
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mdapy.common\_neighbor\_analysis module
---------------------------------------

.. automodule:: mdapy.common_neighbor_analysis
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mdapy.common\_neighbor\_parameter module
----------------------------------------

.. automodule:: mdapy.common_neighbor_parameter
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mdapy.create\_polycrystalline module
------------------------------------

.. automodule:: mdapy.create_polycrystalline
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mdapy.dft2nepxyz module
-----------------------

.. automodule:: mdapy.dft2nepxyz
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mdapy.eam\_average module
-------------------------

.. automodule:: mdapy.eam_average
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mdapy.eam\_generate module
--------------------------

.. automodule:: mdapy.eam_generate
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mdapy.entropy module
--------------------

.. automodule:: mdapy.entropy
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mdapy.identify\_SFs\_TBs module
-------------------------------

.. automodule:: mdapy.identify_SFs_TBs
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mdapy.identify\_diamond\_structure module
-----------------------------------------

.. automodule:: mdapy.identify_diamond_structure
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mdapy.lattice\_maker module
---------------------------

.. automodule:: mdapy.lattice_maker
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mdapy.lindemann\_parameter module
---------------------------------

.. automodule:: mdapy.lindemann_parameter
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mdapy.load\_save\_data module
-----------------------------

.. automodule:: mdapy.load_save_data
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mdapy.main module
-----------------

.. automodule:: mdapy.main
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mdapy.mean\_squared\_displacement module
----------------------------------------

.. automodule:: mdapy.mean_squared_displacement
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mdapy.minimizer module
----------------------

.. automodule:: mdapy.minimizer
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mdapy.nearest\_neighbor module
------------------------------

.. automodule:: mdapy.nearest_neighbor
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mdapy.neighbor module
---------------------

.. automodule:: mdapy.neighbor
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mdapy.orthogonal\_box module
----------------------------

.. automodule:: mdapy.orthogonal_box
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mdapy.pair\_distribution module
-------------------------------

.. automodule:: mdapy.pair_distribution
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mdapy.perturb\_model module
---------------------------

.. automodule:: mdapy.perturb_model
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mdapy.phonon module
-------------------

.. automodule:: mdapy.phonon
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mdapy.pigz module
-----------------

.. automodule:: mdapy.pigz
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mdapy.plotset module
--------------------

.. automodule:: mdapy.plotset
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mdapy.polyhedral\_template\_matching module
-------------------------------------------

.. automodule:: mdapy.polyhedral_template_matching
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mdapy.potential module
----------------------

.. automodule:: mdapy.potential
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mdapy.replicate module
----------------------

.. automodule:: mdapy.replicate
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mdapy.spatial\_binning module
-----------------------------

.. automodule:: mdapy.spatial_binning
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mdapy.steinhardt\_bond\_orientation module
------------------------------------------

.. automodule:: mdapy.steinhardt_bond_orientation
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mdapy.system module
-------------------

.. automodule:: mdapy.system
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mdapy.temperature module
------------------------

.. automodule:: mdapy.temperature
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mdapy.tool\_function module
---------------------------

.. automodule:: mdapy.tool_function
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mdapy.visualize module
----------------------

.. automodule:: mdapy.visualize
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mdapy.void\_distribution module
-------------------------------

.. automodule:: mdapy.void_distribution
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mdapy.voronoi\_analysis module
------------------------------

.. automodule:: mdapy.voronoi_analysis
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mdapy.warren\_cowley\_parameter module
--------------------------------------

.. automodule:: mdapy.warren_cowley_parameter
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Module contents
---------------

.. automodule:: mdapy
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