Index ====== mdapy.ackland\_jones\_analysis module ------------------------------------- .. automodule:: mdapy.ackland_jones_analysis :members: :show-inheritance: :undoc-members: mdapy.angular\_distribution\_function module -------------------------------------------- .. automodule:: mdapy.angular_distribution_function :members: :show-inheritance: :undoc-members: mdapy.atomic\_strain module --------------------------- .. automodule:: mdapy.atomic_strain :members: :show-inheritance: :undoc-members: mdapy.atomic\_temperature module -------------------------------- .. automodule:: mdapy.atomic_temperature :members: :show-inheritance: :undoc-members: mdapy.bond\_analysis module --------------------------- .. automodule:: mdapy.bond_analysis :members: :show-inheritance: :undoc-members: mdapy.bond\_stiffness module ---------------------------- .. automodule:: mdapy.bond_stiffness :members: :show-inheritance: :undoc-members: mdapy.box module ---------------- .. automodule:: mdapy.box :members: :show-inheritance: :undoc-members: mdapy.build\_bond module ------------------------ .. automodule:: mdapy.build_bond :members: :show-inheritance: :undoc-members: mdapy.build\_lattice module --------------------------- .. automodule:: mdapy.build_lattice :members: :show-inheritance: :undoc-members: mdapy.calculator module ----------------------- .. automodule:: mdapy.calculator :members: :show-inheritance: :undoc-members: mdapy.centro\_symmetry\_parameter module ---------------------------------------- .. automodule:: mdapy.centro_symmetry_parameter :members: :show-inheritance: :undoc-members: mdapy.chill\_plus module ------------------------ .. automodule:: mdapy.chill_plus :members: :show-inheritance: :undoc-members: mdapy.cluster\_analysis module ------------------------------ .. automodule:: mdapy.cluster_analysis :members: :show-inheritance: :undoc-members: mdapy.common\_neighbor\_analysis module --------------------------------------- .. automodule:: mdapy.common_neighbor_analysis :members: :show-inheritance: :undoc-members: mdapy.common\_neighbor\_parameter module ---------------------------------------- .. automodule:: mdapy.common_neighbor_parameter :members: :show-inheritance: :undoc-members: mdapy.create\_polycrystal module -------------------------------- .. automodule:: mdapy.create_polycrystal :members: :show-inheritance: :undoc-members: mdapy.data module ----------------- .. automodule:: mdapy.data :members: :show-inheritance: :undoc-members: mdapy.eam module ---------------- .. automodule:: mdapy.eam :members: :show-inheritance: :undoc-members: mdapy.elastic module -------------------- .. automodule:: mdapy.elastic :members: :show-inheritance: :undoc-members: mdapy.identify\_diamond\_structure module ----------------------------------------- .. automodule:: mdapy.identify_diamond_structure :members: :show-inheritance: :undoc-members: mdapy.identify\_fcc\_planar\_faults module ------------------------------------------ .. automodule:: mdapy.identify_fcc_planar_faults :members: :show-inheritance: :undoc-members: mdapy.knn module ---------------- .. automodule:: mdapy.knn :members: :show-inheritance: :undoc-members: mdapy.lammps\_potential module ------------------------------ .. automodule:: mdapy.lammps_potential :members: :show-inheritance: :undoc-members: mdapy.lammps\_runner module --------------------------- .. automodule:: mdapy.lammps_runner :members: :show-inheritance: :undoc-members: mdapy.lindemann\_parameter module --------------------------------- .. automodule:: mdapy.lindemann_parameter :members: :show-inheritance: :undoc-members: mdapy.load\_save module ----------------------- .. automodule:: mdapy.load_save :members: :show-inheritance: :undoc-members: mdapy.md\_elastic module ------------------------ .. automodule:: mdapy.md_elastic :members: :show-inheritance: :undoc-members: mdapy.mean\_squared\_displacement module ---------------------------------------- .. automodule:: mdapy.mean_squared_displacement :members: :show-inheritance: :undoc-members: mdapy.minimizer module ---------------------- .. automodule:: mdapy.minimizer :members: :show-inheritance: :undoc-members: mdapy.neighbor module --------------------- .. automodule:: mdapy.neighbor :members: :show-inheritance: :undoc-members: mdapy.nep module ---------------- .. automodule:: mdapy.nep :members: :show-inheritance: :undoc-members: mdapy.nep4ase module -------------------- .. automodule:: mdapy.nep4ase :members: :show-inheritance: :undoc-members: mdapy.orthogonal\_cell module ----------------------------- .. automodule:: mdapy.orthogonal_cell :members: :show-inheritance: :undoc-members: mdapy.parallel module --------------------- .. automodule:: mdapy.parallel :members: :show-inheritance: :undoc-members: mdapy.phonon module ------------------- .. automodule:: mdapy.phonon :members: :show-inheritance: :undoc-members: mdapy.pigz module ----------------- .. automodule:: mdapy.pigz :members: :show-inheritance: :undoc-members: mdapy.plotset module -------------------- .. automodule:: mdapy.plotset :members: :show-inheritance: :undoc-members: mdapy.polyhedral\_template\_matching module ------------------------------------------- .. automodule:: mdapy.polyhedral_template_matching :members: :show-inheritance: :undoc-members: mdapy.potential\_tool module ---------------------------- .. automodule:: mdapy.potential_tool :members: :show-inheritance: :undoc-members: mdapy.qha\_elastic module ------------------------- .. automodule:: mdapy.qha_elastic :members: :show-inheritance: :undoc-members: mdapy.radial\_distribution\_function module ------------------------------------------- .. automodule:: mdapy.radial_distribution_function :members: :show-inheritance: :undoc-members: mdapy.render module ------------------- .. automodule:: mdapy.render :members: :show-inheritance: :undoc-members: mdapy.spatial\_binning module ----------------------------- .. automodule:: mdapy.spatial_binning :members: :show-inheritance: :undoc-members: mdapy.spline module ------------------- .. automodule:: mdapy.spline :members: :show-inheritance: :undoc-members: mdapy.sqs module ---------------- .. automodule:: mdapy.sqs :members: :show-inheritance: :undoc-members: mdapy.steinhardt\_bond\_orientation module ------------------------------------------ .. automodule:: mdapy.steinhardt_bond_orientation :members: :show-inheritance: :undoc-members: mdapy.structure\_entropy module ------------------------------- .. automodule:: mdapy.structure_entropy :members: :show-inheritance: :undoc-members: mdapy.structure\_factor module ------------------------------ .. automodule:: mdapy.structure_factor :members: :show-inheritance: :undoc-members: mdapy.system module ------------------- .. automodule:: mdapy.system :members: :show-inheritance: :undoc-members: mdapy.tool\_function module --------------------------- .. automodule:: mdapy.tool_function :members: :show-inheritance: :undoc-members: mdapy.trajectory module ----------------------- .. automodule:: mdapy.trajectory :members: :show-inheritance: :undoc-members: mdapy.unwrap\_trajectory module ------------------------------- .. automodule:: mdapy.unwrap_trajectory :members: :show-inheritance: :undoc-members: mdapy.visualize module ---------------------- .. automodule:: mdapy.visualize :members: :show-inheritance: :undoc-members: mdapy.void\_analysis module --------------------------- .. automodule:: mdapy.void_analysis :members: :show-inheritance: :undoc-members: mdapy.voronoi module -------------------- .. automodule:: mdapy.voronoi :members: :show-inheritance: :undoc-members: mdapy.warren\_cowley\_parameter module -------------------------------------- .. automodule:: mdapy.warren_cowley_parameter :members: :show-inheritance: :undoc-members: mdapy.wigner\_seitz\_defect module ---------------------------------- .. automodule:: mdapy.wigner_seitz_defect :members: :show-inheritance: :undoc-members: